NCBI: Tools for data mining The gateway to the data mining tools offered at the National Center for Biotechnology(NCBI). Includes the tools for nucleotide sequence analysis, protein sequence analysis and proteomics, structures, genome analysis, gene expression, and programming.
Genome Workbench An integrated application for viewing and analyzing sequence data. With Genome Workbench, you can view data in publically available sequence databases at NCBI, and mix these data with your own data.
Genome Data Viewer The NCBI Genome Data Viewer (GDV) is a genome browser supporting the exploration and analysis of eukaryotic RefSeq genome assemblies. It allows users to visualize different types of sequence-associated data in a genomic context. (Replacement for Map Viewer)
Genome ProtMap Genome ProtMap maps each protein from a COG, or in the case of viruses a VOG, back to its genome, and displays all the genomic segments coding for members of this particular group of related proteins. The view can be shifted to focus on an adjacent COG/VOG, and clusters can be searched by name, protein gi, or gene locus tag.
ProSplign A utility for computing alignment of proteins to genomic nucleotide sequence. It is based on a variation of the Needleman Wunsch global alignment algorithm and specifically accounts for introns and splice signals. Due to this algorithm, ProSplign is accurate in determining splice sites and tolerant to sequencing errors.
BLAST Link (BLink) A link option on protein records that displays the results of a pre-computed BLAST search of that protein against all other protein sequences at NCBI.
Ask a Librarian | Hours & Directions | Mason Libraries Home
Copyright © George Mason University